Checked the advance mechanism behind the Dyna module. It seems to be moving freely so I figure it's working properly. Not really anything in the manual about how to inspect it. I redid the ignition timing, fired it up and it's still doing the same thing. I squirted some starting fluid at it to try and check for a vacuum leak but didn't find anything.
Upon further advice I went out and checked resistance on the coils and plug caps. They all check out. What I did find was that a couple of the wires would pull out of the plug caps very easily. So, I removed all the caps, trimmed the wires a little and screwed the caps back on. After that I fired it up. It seemed to run a little more smoothly, maybe it's just me. I also noticed that, while the idle would still hang up, if I took my screw driver and pressed on one of the sync adjustment screws that the idle would come back down.
I know that just pressing on the screw is probably moving the whole throttle linkage assembly but to me this indicates that therein may lie part of the problem. So, next thing up is to order a sync tool and give that a whack.