Forget about distance between the tire and the ground. There are too many variables there to control. Tire circumferences vary across brand, model, and even within the same brand and model. Even if tires were all perfect, I doubt all center stands are the same.
What you want to do is set the bike up at stock ride height with stock caster angle, then let the wheel with the same tire you are going to use sit on the ground. Then you can measure the swing arm angle. Using ride height, castor angle, and swing arm angle allows you to set all chassis parameters, including wheelbase. A high quality digital level works best for these measurements.
You'll need to make some accommodation for suspension sag. I'd take the spring off the dampers, measure out the total available travel, set the shock rod to about 30% compression, measure the center to center length, then make some solid pieces of that length to use for frame mock-up.
As for shock angle somebody is going to have measure that for you.