What year 750 do you have? What year bike are the boots from (or are they the original boots)? What year bike are the carbs from (or are they the original carbs?). I'm thinking you might be using different year parts, and the earlier 750 carb mounts are smaller than the later parts.
However, if all is original, and you are finding the rubber boots are not pliable enough (hard as a rock from age) to stretch around the carb mounts, heat up the rubber with a heat gun, then slip carbs in.