We do a lot of this stuff, and you must get the seat unit to sit in the correct place, as you will never be happy with it mounted incorrectly, ie as it is in the picture. It is important to get the lines right....the bottom edge of the seat should be in line with, or close to that of the tank, or it will look cobbled together. If that means cutting the frame....then cut it. Neatly remove the not needed bracket with a cutting disk, and if needed, it can always be welded back on again. Fibre glass seat units are generally not strong enough to carry a rider's weight with supports at either end, it will likely need some connection to the frame in the middle too, or it will flex, and crack your paint. A piece of ply can be bonded into the bottom of the seat to strengthen it, cut it to shape, and use a strong bond to secure it. Get some mild steel strapping, about 2mm X 50mm and bend some brackets, which can also be bonded in to align with holes in the frame.
You can use race style self adhesive seat foam, or make an aluminium seat pan and attach proper upholstery to that.....which is then easy to attach to your seat unit.