My bike was rejetted by the previous owner. It has K&N pods and a 2 into 1 exhaust with a poorly baffled muffler. According to my Clymer's manual the stock settings for the carbs are #70 Primary Main jet, #112 Secondary main jet, 15.5mm float level, and the air screws 2 turns out. Mine currently has #115 secondary jets, floats are set at 16.5mm, and I think the air screws are 3.5 turns out. Don't remember for sure though. It's running pretty well exept for a small amount of popping when it's idling in gear. The larger the jet size the large the opening in the jet. Before you start messing with your carbs make sure everything else is running correctly. Clean off your spark plugs get the bike nice and warm. Run it at wide open throttle at 7,000+ RPM and hit the kill switch without letting it idle. Then check the plugs. If they're white then the bike is running lean and you'll need to rejet. It probably won't be running rich with pods on it. There are a lot of good resources out there on carb tuning, they know a lot more than I do. Each setting on carbs will affect certain parts of the power band at certain throttle openings. Start with the main jets first and work your way down. Check these out: http://www.factorypro.com/tech_tuning_procedures/tuning_carbtune,CV,high_rpm_engines.html
http://www.carbparts.com/keihin/needles_tuning/jet_needle_changes.htm
There are a lot more resources out there, I just can't find my bookmarks right now. Once, again, I'm not an expert but I hope this will point you in the right direction.