First you need to install the cambox cover and torque all the stud nuts to spec, then you can adjust the valve clearances.
Second, both pistons are never at TDC before the power stroke (both valves closed, both rockers loose) at the same time. After you adjust the left rockers, rotate the crank forward until the T lines up with the timing mark. Now the right piston should be at TDC with both rockers loose ready for setting valve clearance.