OK, now I'm a little more confused than when I started! I have rerun the calculations and come up with the following (I based a lot of the assumptions in your article Sonreir so let me know if anything you mentioned for a 2 cylinder doesn't apply to a 4 cylinder):
CC: 466
Ideal RPM: 8k
Rotations per Period: 2
Ideal Header Diameter: 0.96"
Ideal Header Length: 15.1"
This is a long way off where my current headers are. These are 1.25" OD (I assume closer to 1" ID) with a length of 25". What effect does this have on the bike? I am struggling to see how I could get away with 15" as this would barely reach under the bike for a merge collector.
I have also calculated the current system length to work out how far from ideal I am. 25" header, 16" mid pipe, 16" muffler. Total 54"
I plan on running a 4-1-2 merge system in the middle, so I calculate this to require a system of 60.4"
Have I made any mistakes along the way?
So the questions I have is, what result would a wider diameter but longer header have on the header system