Bike is running like a champ! Figured I would post up about it.
Need to polish the engine, but so far it has been running pristine.
For anyone in the area, check out Taka @ Peak Point, he diagnosed and fixed the little engine issues I had that I could not figure out. Bike is running immaculately after Taka put his hands on it.
http://peak-point.net/index.php?p=1&PHPSESSID=45722e9259f7459376e71b8288cc6330
He is in Queens, great mechanic:
http://archive.mensjournal.com/the-honda-whisperer