Is the engine stuttering when trying to climb in revs while riding, or is the engine drowning (more of a bwroap sound).
Stuttering would indicate lean most of the times. Drowning would indicate too rich.
First quick try should be getting the carb leaner when you started with a stock bike. Those are tuned to the lean side for emissions, and when you start changing things you rappidly need to go a big bigger with your jet sizes.