Ok so I set the point gap again and then did the static timing using a light, it was way off. Turns out my points are at the very end of their useful life cycle, the gap has to be .016 for the timing to stay on. I also gapped the valves to the proper setting. The bike runs a lot better now, still burbles and farts between 3000-5000 rpm, (due to the pods) then clears up fine and then struggles to get past 8000 rpm due to the secondary being the stock jet size and the motor is getting lean.
Now the only problem is the battery won't hold a charge, not sure if it is an electrical issue or a battery issue, the guy I bought it from disconnected the kill switch and the one/off switch on the right handle bar, and the horn and who knows what else, there is about a dozen disconnected wires under the tank. With that said, the lights (hi and low beam) work, the turn signals work, the brake light works, the neutral light works, and the orange turn signal signal in the Tach works. I also always run the bike with the HI beams on to charge the battery, I read on this forum that is how the bike charges.
The questions I have are, I still have the stock air boxes and I was wondering what would happen if I put them back on with new filters (the old ones are full of dirt), and ran the bike like that. Would that solve a lot of the jetting issues, even if I left it with the open exhaust? And now that I changed the timing and valves, and points gap, the right carb pilot screw seems to actually do something. I have set the left side carb to 2.5 turns out as that seems to be the best rpm, and the left one wants to be around 2 turns out, does that sound better? I pulled the screws and both are clean and then I shot some carb cleaner into where the screws went in, should I look for anything else?
Thanks.